A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3272062



Internal ID22377579
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr1:89797722..89797848hg38UCSC Ensembl
chr1:90263281..90263407hg19UCSC Ensembl
Cytoband1p22.2
Allele length
AssemblyAllele length
hg38127
hg19127
Variant TypeCNV sva deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14405410
SamplesNA19240
Known Genes
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsAbsence of a SVA mobile element insertion that is present in the reference
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3272062
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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