A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3211022



Internal ID22358721
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Outerchr8:6988109..8149448hg38UCSC Ensembl
Outerchr8:6845631..8006970hg19UCSC Ensembl
Cytoband8p23.1
Allele length
AssemblyAllele length
hg381161340
hg191161340
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14280852, nssv14280850, nssv14280849, nssv14280851
SamplesHG00512, NA19238, NA19239, HG00733
Known GenesDEFA1, DEFA11P, DEFA1B, DEFA3, DEFA5, DEFB103A, DEFB103B, DEFB104A, DEFB104B, DEFB105A, DEFB105B, DEFB106A, DEFB106B, DEFB107A, DEFB107B, DEFB109P1B, DEFB4A, DEFB4B, DEFT1P, DEFT1P2, FAM66B, FAM66E, FAM90A10P, FAM90A7P, LINC00965, MIR548I3, PRR23D1, PRR23D2, SPAG11A, SPAG11B, USP17L1P, USP17L3, USP17L4, USP17L8, ZNF705B, ZNF705G
MethodOptical mapping
AnalysisBioNano Genomics proprietary analysis
PlatformBioNano Genomics
Comments
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3211022
Frequency
Sample Size9
Observed Gain0
Observed Loss4
Observed Complex0
Frequencyn/a


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