A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3188104



Internal ID22340083
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr3:196271997..196272189hg38UCSC Ensembl
chr3:195998868..195999060hg19UCSC Ensembl
Cytoband3q29
Allele length
AssemblyAllele length
hg38193
hg19193
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14410369
SamplesNA19240
Known GenesPCYT1A
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsAbsence of a Alu.Moasic mobile element insertion that is present in the reference
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3188104
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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