A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3179505



Internal ID22335597
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr19:45400750..45401075hg38UCSC Ensembl
chr19:45904008..45904333hg19UCSC Ensembl
Cytoband19q13.32
Allele length
AssemblyAllele length
hg38326
hg19326
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv4289n152
Supporting Variantsnssv14407425, nssv14432294
SamplesNA19240, HG00514
Known GenesPPP1R13L
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsAbsence of a AluY mobile element insertion that is present in the reference
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3179505
Frequency
Sample Size9
Observed Gain0
Observed Loss2
Observed Complex0
Frequencyn/a


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