A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3178883



Internal ID22335244
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:49076224..49076701hg38UCSC Ensembl
chr12:49470007..49470484hg19UCSC Ensembl
Cytoband12q13.12
Allele length
AssemblyAllele length
hg38478
hg19478
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv14394288, nssv14421978, nssv14448526
SamplesNA19240, HG00733, HG00514
Known Genes
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsAbsence of a AluS mobile element insertion that is present in the reference
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3178883
Frequency
Sample Size9
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


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