A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3178240



Internal ID22334878
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr12:103899614..103899941hg38UCSC Ensembl
chr12:104293392..104293719hg19UCSC Ensembl
Cytoband12q23.3
Allele length
AssemblyAllele length
hg38328
hg19328
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv1977n152
Supporting Variantsnssv14423070
SamplesHG00514
Known GenesGNN
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsAbsence of a AluY mobile element insertion that is present in the reference
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3178240
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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