A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv3171198



Internal ID22331160
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
chr8:54059299..54059613hg38UCSC Ensembl
chr8:54971859..54972173hg19UCSC Ensembl
Cytoband8q11.23
Allele length
AssemblyAllele length
hg38315
hg19315
Variant TypeCNV alu deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv9178n152
Supporting Variantsnssv14438148
SamplesHG00514
Known GenesLYPLA1
MethodMerging
AnalysisPhasedSV,MsPAC, Multiple Illumina callers, BioNano Genomics software
PlatformSee merged experiments
CommentsAbsence of a AluY mobile element insertion that is present in the reference
ReferenceChaisson_et_al_2019
Pubmed ID30992455
Accession Number(s)nsv3171198
Frequency
Sample Size9
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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