Variant Details

Variant: nsv3170235

Internal ID

21314296

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:209908268..209910639	hg38	UCSC Ensembl
Outer	chr1:209897717..209913207	hg38	UCSC Ensembl
Inner	chr1:210081613..210083984	hg19	UCSC Ensembl
Outer	chr1:210071062..210086552	hg19	UCSC Ensembl
Inner	chr1:208148236..208150607	hg18	UCSC Ensembl
Outer	chr1:208137685..208153175	hg18	UCSC Ensembl

Cytoband

1q32.2

Allele length

Assembly	Allele length
hg38	15491
hg19	15491
hg18	15491

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14245676, nssv14251455, nssv14243714, nssv14242483, nssv14242892, nssv14244547, nssv14246086, nssv14241544, nssv14251258, nssv14240918, nssv14246013, nssv14246037, nssv14251399, nssv14250938, nssv14251951, nssv14251281, nssv14250220, nssv14243703, nssv14242558, nssv14244125, nssv14245215, nssv14241372, nssv14247135, nssv14252368, nssv14250739, nssv14250150, nssv14251259, nssv14241469, nssv14251508, nssv14247423, nssv14249620, nssv14244438, nssv14245429, nssv14243214, nssv14250374, nssv14244088, nssv14242510, nssv14240756, nssv14251209, nssv14247016, nssv14250876, nssv14251515, nssv14246747, nssv14250524, nssv14246947, nssv14251808, nssv14247092, nssv14246532, nssv14245650, nssv14242484, nssv14247419, nssv14241000, nssv14252165, nssv14249368, nssv14243433, nssv14241396, nssv14252413, nssv14243012, nssv14250071, nssv14244751, nssv14244730, nssv14246449, nssv14240914, nssv14243184, nssv14251459, nssv14252191, nssv14248523, nssv14247936, nssv14241067, nssv14241759, nssv14250558, nssv14245444, nssv14245617

Samples

NGO_13, NGO_21, SNI_17, NGO_3, NGO_22, SNI_2, MLY_6, MLY_5, NGO_27, SNI_13, SNI_8, MLY_1, SNI_11, NGO_37, NGO_18, NGO_12, NGO_41, MLY_12, NGO_53, SNI_10, SNI_7, NGO_29, NGO_32, NGO_10, NGO_45, PML_1, NGO_4, NGO_17, NGO_43, MLY_16, SNI_9, NGO_24, NGO_31, PML_3, NGO_50, NGO_39, NGO_14, NGO_19, NGO_30, MLY_9, NGO_20, NGO_26, MLY_7, NGO_40, PML_2, NGO_2, NGO_6, NGO_33, MLY_3, PML_4, NGO_16, SNI_12, SNI_3, NGO_1, NGO_52, NGO_55, NGO_36, SNI_5, NGO_49, NGO_42, NGO_34, NGO_48, MLY_10, NGO_8, NGO_44, MLY_4, MLY_14, SNI_14, NGO_11, NGO_7, NGO_51, NGO_15, NGO_38

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3170235

Frequency

Sample Size	93
Observed Gain	1
Observed Loss	72
Observed Complex	0
Frequency	n/a