Variant Details

Variant: nsv3170219

Internal ID

21314280

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr11:4926930..4955852	hg38	UCSC Ensembl
Outer	chr11:4926918..4957152	hg38	UCSC Ensembl
Inner	chr11:4948160..4977082	hg19	UCSC Ensembl
Outer	chr11:4948148..4978382	hg19	UCSC Ensembl
Inner	chr11:4904736..4933658	hg18	UCSC Ensembl
Outer	chr11:4904724..4934958	hg18	UCSC Ensembl

Cytoband

11p15.4

Allele length

Assembly	Allele length
hg38	30235
hg19	30235
hg18	30235

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14250910, nssv14243460, nssv14252097, nssv14250127, nssv14251320, nssv14247595, nssv14241930, nssv14250330, nssv14242733, nssv14247110, nssv14241484, nssv14246097, nssv14244837, nssv14247682, nssv14247856, nssv14247441, nssv14246493, nssv14243584, nssv14249240, nssv14250323, nssv14242628, nssv14242644, nssv14248873, nssv14251282, nssv14246623, nssv14245361, nssv14245083, nssv14242093, nssv14250750, nssv14249178, nssv14242455, nssv14246174, nssv14244110, nssv14249309, nssv14245172, nssv14248618, nssv14246173, nssv14244904, nssv14250939, nssv14249091, nssv14244373, nssv14250424, nssv14243539, nssv14241660, nssv14250140, nssv14251933, nssv14247679

Samples

MLY_15, NGO_3, NGO_22, SNI_2, NGO_27, SNI_13, SNI_8, MLY_11, NGO_28, MLY_12, SNI_10, SNI_7, NGO_46, NGO_9, NGO_45, PML_1, NGO_4, MLY_13, NGO_43, MLY_16, NGO_54, NGO_31, NGO_35, NGO_39, MLY_9, SNI_1, MLY_7, NGO_47, MLY_2, NGO_2, NGO_6, MLY_8, PML_4, SNI_3, NGO_1, NGO_52, NGO_36, SNI_5, NGO_49, NGO_5, NGO_48, NGO_44, SNI_14, NGO_7, NGO_51, NGO_38, SNI_4

Known Genes

OR51A2, OR51A4

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3170219

Frequency

Sample Size	93
Observed Gain	1
Observed Loss	46
Observed Complex	0
Frequency	n/a