Variant Details

Variant: nsv3170147

Internal ID

21314208

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:105453957..105487979	hg38	UCSC Ensembl
Outer	chr1:105442070..105491310	hg38	UCSC Ensembl
Inner	chr1:105996579..106030601	hg19	UCSC Ensembl
Outer	chr1:105984692..106033932	hg19	UCSC Ensembl
Inner	chr1:105798102..105832124	hg18	UCSC Ensembl
Outer	chr1:105786215..105835455	hg18	UCSC Ensembl

Cytoband

1p21.1

Allele length

Assembly	Allele length
hg38	49241
hg19	49241
hg18	49241

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14242962, nssv14248945, nssv14244534, nssv14251456, nssv14248951, nssv14247518, nssv14241361, nssv14251945, nssv14249494, nssv14241593, nssv14244866, nssv14244271, nssv14252536, nssv14243387, nssv14243840, nssv14241264, nssv14240992, nssv14248309, nssv14251200, nssv14247553, nssv14246940, nssv14243507, nssv14243960, nssv14247995, nssv14251572, nssv14242802, nssv14241155, nssv14242911, nssv14246773, nssv14240808, nssv14244194, nssv14247325, nssv14244354, nssv14242276, nssv14245848, nssv14252339, nssv14246232, nssv14240775, nssv14244968, nssv14247477, nssv14242898, nssv14250445, nssv14242365, nssv14251851, nssv14242225, nssv14250051, nssv14244618, nssv14250378, nssv14244196, nssv14245009, nssv14249336, nssv14243297, nssv14247877

Samples

NGO_21, MLY_15, SNI_17, NGO_3, MLY_6, MLY_5, SNI_13, MLY_1, NGO_18, MLY_17, MLY_12, NGO_53, SNI_10, SNI_7, NGO_10, NGO_9, NGO_45, PML_1, NGO_17, MLY_16, NGO_24, PML_3, NGO_50, NGO_14, NGO_30, MLY_9, NGO_26, SNI_1, MLY_7, NGO_47, MLY_2, NGO_2, SNI_16, NGO_33, MLY_3, MLY_8, PML_4, SNI_12, SNI_3, NGO_1, NGO_52, NGO_49, SNI_6, SNI_15, NGO_42, NGO_34, NGO_48, NGO_44, MLY_4, SNI_14, NGO_51, SNI_4

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3170147

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	52
Observed Complex	0
Frequency	n/a