Variant Details

Variant: nsv3170058

Internal ID

21314119

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr22:38967614..39003307	hg38	UCSC Ensembl
Outer	chr22:38955461..39007789	hg38	UCSC Ensembl
Inner	chr22:39363619..39399312	hg19	UCSC Ensembl
Outer	chr22:39351466..39403794	hg19	UCSC Ensembl
Inner	chr22:37693565..37729258	hg18	UCSC Ensembl
Outer	chr22:37681412..37733740	hg18	UCSC Ensembl

Cytoband

22q13.1

Allele length

Assembly	Allele length
hg38	52329
hg19	52329
hg18	52329

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14246243, nssv14250492, nssv14252036, nssv14243403, nssv14242787, nssv14246009, nssv14249673, nssv14251133, nssv14248735, nssv14246638, nssv14246633, nssv14243941, nssv14251745, nssv14243567, nssv14246516, nssv14244231, nssv14244479, nssv14241823, nssv14246928, nssv14252489, nssv14245350, nssv14241645, nssv14246349, nssv14242493, nssv14243590, nssv14246418, nssv14250591, nssv14251994, nssv14241697, nssv14245846, nssv14242584, nssv14246684, nssv14241844, nssv14249917, nssv14243068, nssv14250920, nssv14246434, nssv14250809, nssv14249472, nssv14247823, nssv14245043, nssv14241294, nssv14251655, nssv14247193, nssv14250960, nssv14248139, nssv14242164, nssv14243841, nssv14241835, nssv14247983, nssv14240913, nssv14246933, nssv14245784, nssv14249691

Samples

NGO_21, MLY_15, SNI_17, NGO_3, NGO_22, SNI_2, NGO_27, SNI_8, SNI_11, NGO_12, NGO_41, MLY_17, NGO_28, MLY_12, NGO_53, SNI_10, NGO_29, NGO_10, NGO_46, NGO_9, PML_1, NGO_4, MLY_13, NGO_43, SNI_9, NGO_24, PML_3, NGO_14, NGO_30, MLY_9, NGO_26, SNI_1, NGO_47, MLY_2, PML_2, NGO_2, SNI_16, NGO_6, MLY_3, PML_4, SNI_3, NGO_1, NGO_52, NGO_55, SNI_5, NGO_42, NGO_34, NGO_5, NGO_48, NGO_8, NGO_11, NGO_7, NGO_51, SNI_4

Known Genes

APOBEC3A, APOBEC3A_B, APOBEC3B, APOBEC3B-AS1

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3170058

Frequency

Sample Size	93
Observed Gain	1
Observed Loss	53
Observed Complex	0
Frequency	n/a