Variant Details

Variant: nsv3170039

Internal ID

21314100

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr19:5510228..5513048	hg38	UCSC Ensembl
Outer	chr19:5506648..5515782	hg38	UCSC Ensembl
Inner	chr19:5510239..5513059	hg19	UCSC Ensembl
Outer	chr19:5506659..5515793	hg19	UCSC Ensembl
Inner	chr19:5461239..5464059	hg18	UCSC Ensembl
Outer	chr19:5457659..5466793	hg18	UCSC Ensembl

Cytoband

19p13.3

Allele length

Assembly	Allele length
hg38	9135
hg19	9135
hg18	9135

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14244403, nssv14241693, nssv14242218, nssv14249330, nssv14250966, nssv14250469, nssv14249621, nssv14248870, nssv14242037, nssv14251205, nssv14243091, nssv14250703, nssv14251780, nssv14242823, nssv14248708, nssv14251310, nssv14247950, nssv14246973, nssv14245779, nssv14249978, nssv14242301, nssv14248852, nssv14247097, nssv14241252, nssv14249977, nssv14247555, nssv14244295, nssv14243279, nssv14240994, nssv14245294, nssv14249447, nssv14246211, nssv14249277, nssv14248493, nssv14247383, nssv14249791, nssv14242533, nssv14248520, nssv14249203, nssv14246169

Samples

MLY_15, SNI_17, NGO_3, NGO_22, MLY_5, SNI_13, MLY_1, MLY_11, MLY_17, NGO_28, NGO_29, NGO_32, NGO_10, PML_1, NGO_17, MLY_13, MLY_16, NGO_54, NGO_24, NGO_31, PML_3, NGO_39, MLY_9, NGO_26, NGO_47, NGO_40, PML_2, SNI_16, NGO_25, NGO_6, PML_4, SNI_12, NGO_1, SNI_6, SNI_15, MLY_4, MLY_14, SNI_14, NGO_11, NGO_7

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3170039

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	40
Observed Complex	0
Frequency	n/a