Variant Details

Variant: nsv3170024

Internal ID

21314085

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:178682974..178686162	hg38	UCSC Ensembl
Outer	chr5:178680821..178691854	hg38	UCSC Ensembl
Inner	chr5:178109975..178113163	hg19	UCSC Ensembl
Outer	chr5:178107822..178118855	hg19	UCSC Ensembl
Inner	chr5:178042581..178045769	hg18	UCSC Ensembl
Outer	chr5:178040428..178051461	hg18	UCSC Ensembl

Cytoband

5q35.3

Allele length

Assembly	Allele length
hg38	11034
hg19	11034
hg18	11034

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14244489, nssv14248931, nssv14250789, nssv14244716, nssv14243135, nssv14251210, nssv14242181, nssv14247384, nssv14251584, nssv14240813, nssv14251197, nssv14240796, nssv14241995, nssv14248145, nssv14249762, nssv14248360, nssv14243247, nssv14246022, nssv14242518, nssv14251196, nssv14245394, nssv14243056, nssv14246267, nssv14245053, nssv14241827, nssv14244162, nssv14243754, nssv14245212, nssv14244779, nssv14241735, nssv14249714, nssv14250495, nssv14243854, nssv14251560, nssv14252206, nssv14241925, nssv14247531, nssv14247231, nssv14252117, nssv14251583, nssv14247476, nssv14247612, nssv14245401, nssv14240751, nssv14252207, nssv14243897, nssv14247920, nssv14250273, nssv14247486, nssv14241285, nssv14250135, nssv14246978, nssv14242053, nssv14241552, nssv14245687, nssv14252178, nssv14249567

Samples

NGO_13, NGO_21, SNI_2, MLY_6, SNI_13, SNI_8, MLY_1, NGO_37, NGO_18, MLY_11, MLY_17, NGO_53, SNI_10, SNI_7, NGO_29, NGO_32, NGO_46, NGO_9, NGO_17, NGO_43, MLY_16, SNI_9, NGO_24, PML_3, NGO_50, NGO_14, NGO_19, NGO_30, MLY_9, NGO_20, NGO_47, NGO_40, MLY_2, PML_2, NGO_2, NGO_25, NGO_6, NGO_33, MLY_8, NGO_16, SNI_12, SNI_3, NGO_52, NGO_23, SNI_5, NGO_49, SNI_6, NGO_42, NGO_34, NGO_5, MLY_10, NGO_44, SNI_14, NGO_7, NGO_51, NGO_15, SNI_4

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3170024

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	57
Observed Complex	0
Frequency	n/a