Variant Details

Variant: nsv3169992

Internal ID

21314053

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr16:88080057..88081785	hg38	UCSC Ensembl
Outer	chr16:88076816..88082524	hg38	UCSC Ensembl
Inner	chr16:88113663..88115391	hg19	UCSC Ensembl
Outer	chr16:88110422..88116130	hg19	UCSC Ensembl
Inner	chr16:86671164..86672892	hg18	UCSC Ensembl
Outer	chr16:86667923..86673631	hg18	UCSC Ensembl

Cytoband

16q24.2

Allele length

Assembly	Allele length
hg38	5709
hg19	5709
hg18	5709

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14248633, nssv14245049, nssv14250032, nssv14250842, nssv14246942, nssv14251523, nssv14249470, nssv14242068, nssv14250121, nssv14249662, nssv14243407, nssv14250665, nssv14250299, nssv14245734, nssv14250506, nssv14244298, nssv14241686, nssv14242697, nssv14242990, nssv14246830, nssv14240810, nssv14250538, nssv14249461, nssv14244084, nssv14241043, nssv14251566, nssv14246498, nssv14243249, nssv14242300, nssv14241854, nssv14240773, nssv14250642, nssv14243532, nssv14251559, nssv14248833, nssv14240799, nssv14247227, nssv14251770, nssv14247841, nssv14242456, nssv14242361, nssv14244698, nssv14250401, nssv14245241, nssv14241465, nssv14248744, nssv14248376, nssv14243227, nssv14250829, nssv14247128, nssv14250304, nssv14247055, nssv14244998, nssv14246788, nssv14244842, nssv14241132, nssv14241996, nssv14244582, nssv14248038, nssv14249052, nssv14250554

Samples

MLY_15, SNI_17, NGO_22, SNI_2, MLY_6, NGO_27, SNI_13, SNI_8, SNI_11, NGO_18, NGO_12, MLY_11, MLY_17, NGO_28, SNI_10, SNI_7, NGO_29, NGO_32, NGO_10, NGO_46, NGO_9, PML_1, NGO_4, NGO_17, NGO_54, NGO_24, NGO_31, PML_3, NGO_50, NGO_35, NGO_39, NGO_14, NGO_19, NGO_30, MLY_9, NGO_20, NGO_26, MLY_2, PML_2, SNI_16, NGO_25, NGO_33, PML_4, NGO_16, SNI_3, NGO_1, NGO_52, NGO_55, NGO_36, NGO_23, SNI_5, NGO_49, SNI_6, SNI_15, NGO_8, NGO_44, MLY_4, MLY_14, NGO_51, NGO_15, SNI_4

Known Genes

BANP

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169992

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	61
Observed Complex	0
Frequency	n/a