Variant Details

Variant: nsv3169963

Internal ID

21314024

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr16:21378649..21591309	hg38	UCSC Ensembl
Outer	chr16:21368130..21594646	hg38	UCSC Ensembl
Inner	chr16:21389970..21602630	hg19	UCSC Ensembl
Outer	chr16:21379451..21605967	hg19	UCSC Ensembl
Inner	chr16:21297471..21510131	hg18	UCSC Ensembl
Outer	chr16:21286952..21513468	hg18	UCSC Ensembl

Cytoband

16p12.2

Allele length

Assembly	Allele length
hg38	226517
hg19	226517
hg18	226517

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14252192, nssv14248081, nssv14247223, nssv14248202, nssv14243740, nssv14240943, nssv14241406, nssv14244452, nssv14247957, nssv14251433, nssv14246752, nssv14242490, nssv14252079, nssv14246603, nssv14247661, nssv14248978, nssv14251249, nssv14245157, nssv14241726, nssv14250542, nssv14242665, nssv14249630, nssv14241346, nssv14244461, nssv14249781, nssv14252418, nssv14248570, nssv14252539, nssv14245744, nssv14252057, nssv14246146, nssv14244058, nssv14244006, nssv14251575, nssv14251998, nssv14247272, nssv14251069, nssv14247889, nssv14249113, nssv14244877, nssv14244480, nssv14242324, nssv14245321, nssv14244076, nssv14244228, nssv14241649, nssv14251987, nssv14244195, nssv14249871, nssv14251218, nssv14246368, nssv14251477, nssv14242075, nssv14245509, nssv14246164, nssv14242548, nssv14242497, nssv14246288, nssv14246003, nssv14250226, nssv14242438, nssv14245680, nssv14245502, nssv14244577, nssv14243593, nssv14251242, nssv14241259, nssv14240830, nssv14245508, nssv14241448, nssv14243991, nssv14243742, nssv14246780

Samples

NGO_13, NGO_21, MLY_15, SNI_17, NGO_3, NGO_22, MLY_6, MLY_5, SNI_13, SNI_11, NGO_37, NGO_18, NGO_12, MLY_11, NGO_28, MLY_12, SNI_10, SNI_7, NGO_29, NGO_32, NGO_9, NGO_45, NGO_17, MLY_13, NGO_43, MLY_16, SNI_9, PML_3, NGO_50, NGO_35, NGO_39, NGO_14, MLY_9, NGO_20, NGO_26, MLY_7, NGO_47, MLY_2, PML_2, SNI_16, NGO_33, MLY_3, MLY_8, SNI_12, SNI_3, NGO_1, NGO_52, NGO_55, SNI_5, SNI_6, SNI_15, NGO_34, NGO_48, MLY_10, NGO_8, NGO_44, MLY_4, MLY_14, SNI_14, NGO_11, NGO_7, NGO_51, NGO_15, NGO_38, SNI_4

Known Genes

LOC100190986, LOC100271836, NPIPB3, SLC7A5P2, SNX29P1

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169963

Frequency

Sample Size	93
Observed Gain	63
Observed Loss	2
Observed Complex	0
Frequency	n/a