Variant Details

Variant: nsv3169954

Internal ID

21314015

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:248555302..248647345	hg38	UCSC Ensembl
Outer	chr1:248550690..248650779	hg38	UCSC Ensembl
Inner	chr1:248718603..248810646	hg19	UCSC Ensembl
Outer	chr1:248713991..248814080	hg19	UCSC Ensembl
Inner	chr1:246785226..246877269	hg18	UCSC Ensembl
Outer	chr1:246780614..246880703	hg18	UCSC Ensembl

Cytoband

1q44

Allele length

Assembly	Allele length
hg38	100090
hg19	100090
hg18	100090

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14250720, nssv14243031, nssv14241284, nssv14246678, nssv14241188, nssv14245093, nssv14249112, nssv14247109, nssv14246683, nssv14245700, nssv14249389, nssv14244575, nssv14247182, nssv14251170, nssv14245240, nssv14251465, nssv14245330, nssv14249110, nssv14241414, nssv14247638, nssv14240784, nssv14244561, nssv14243583, nssv14243157, nssv14244585, nssv14250648, nssv14242286, nssv14245935, nssv14241158, nssv14241133, nssv14243902, nssv14249661, nssv14243645, nssv14241050, nssv14244098

Samples

SNI_2, MLY_6, SNI_8, MLY_1, NGO_37, NGO_53, SNI_7, NGO_29, NGO_10, NGO_46, NGO_45, NGO_54, NGO_31, NGO_39, NGO_14, NGO_20, NGO_26, NGO_47, NGO_40, MLY_2, SNI_16, NGO_25, NGO_16, SNI_12, SNI_3, NGO_52, NGO_36, SNI_5, NGO_49, SNI_6, NGO_42, NGO_34, NGO_8, NGO_11, NGO_38

Known Genes

OR2T10, OR2T11, OR2T27, OR2T29, OR2T34, OR2T35

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169954

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	35
Observed Complex	0
Frequency	n/a