Variant Details

Variant: nsv3169919

Internal ID

21313730

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr7:143521875..143870966	hg38	UCSC Ensembl
Outer	chr7:143521765..143875073	hg38	UCSC Ensembl
Inner	chr7:143218968..143568059	hg19	UCSC Ensembl
Outer	chr7:143218858..143572166	hg19	UCSC Ensembl
Inner	chr7:142929090..143198992	hg18	UCSC Ensembl
Outer	chr7:142928980..143203099	hg18	UCSC Ensembl

Cytoband

7q35

Allele length

Assembly	Allele length
hg38	353309
hg19	353309
hg18	274120

Variant Type

CNV duplication

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14251351, nssv14250765, nssv14240829, nssv14249629, nssv14245557, nssv14242172, nssv14241472, nssv14249302, nssv14242617, nssv14248324, nssv14250892, nssv14249176, nssv14245047, nssv14251661, nssv14250565, nssv14249599, nssv14243125, nssv14241062, nssv14244400, nssv14248697, nssv14244307, nssv14243075, nssv14245149, nssv14249889, nssv14241781, nssv14251924, nssv14246935, nssv14246017, nssv14249796, nssv14249406, nssv14245548, nssv14248919, nssv14251812, nssv14243021, nssv14251802, nssv14250838, nssv14251543, nssv14242395, nssv14244541, nssv14247978, nssv14251419, nssv14243105, nssv14251497, nssv14246011, nssv14249897, nssv14249327, nssv14245980, nssv14244824, nssv14249032, nssv14246359, nssv14251464, nssv14244369, nssv14246980, nssv14243398, nssv14246322, nssv14250362, nssv14247893, nssv14248227, nssv14251608, nssv14241223, nssv14245014, nssv14252071, nssv14246749, nssv14243124, nssv14246519, nssv14244249, nssv14252494, nssv14252061, nssv14246786, nssv14241800, nssv14246709, nssv14250230, nssv14251762, nssv14241491, nssv14250551, nssv14246398, nssv14241652, nssv14250375, nssv14246007, nssv14243624, nssv14245297, nssv14251847, nssv14244225, nssv14250192, nssv14242272, nssv14242477, nssv14248051, nssv14244421

Samples

NGO_13, NGO_21, MLY_15, SNI_17, NGO_3, NGO_22, MLY_6, MLY_5, NGO_27, SNI_13, SNI_8, MLY_1, SNI_11, NGO_37, NGO_18, MLY_11, NGO_41, MLY_17, NGO_28, MLY_12, NGO_53, SNI_10, SNI_7, NGO_29, NGO_32, NGO_10, NGO_46, NGO_9, NGO_45, PML_1, NGO_4, NGO_17, MLY_13, NGO_43, MLY_16, SNI_9, NGO_54, NGO_24, NGO_31, PML_3, NGO_50, NGO_35, NGO_39, NGO_14, NGO_19, NGO_30, MLY_9, NGO_20, NGO_26, SNI_1, MLY_7, NGO_40, MLY_2, PML_2, NGO_2, SNI_16, NGO_25, NGO_6, NGO_33, MLY_3, MLY_8, PML_4, NGO_16, SNI_12, SNI_3, NGO_1, NGO_52, NGO_55, NGO_23, SNI_5, NGO_49, SNI_6, SNI_15, NGO_34, NGO_5, NGO_48, MLY_10, NGO_8, NGO_44, MLY_4, MLY_14, SNI_14, NGO_11, NGO_7, NGO_51, NGO_15, NGO_38, SNI_4

Known Genes

CTAGE15, CTAGE6, EPHA1-AS1, FAM115A, FAM115C, LOC154761

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169919

Frequency

Sample Size	93
Observed Gain	88
Observed Loss	0
Observed Complex	0
Frequency	n/a