Variant Details

Variant: nsv3169804

Internal ID

21313615

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr4:137154526..137173967	hg38	UCSC Ensembl
Outer	chr4:137146964..137187209	hg38	UCSC Ensembl
Inner	chr4:138075680..138095121	hg19	UCSC Ensembl
Outer	chr4:138068118..138108363	hg19	UCSC Ensembl
Inner	chr4:138295130..138314571	hg18	UCSC Ensembl
Outer	chr4:138287568..138327813	hg18	UCSC Ensembl

Cytoband

4q28.3

Allele length

Assembly	Allele length
hg38	40246
hg19	40246
hg18	40246

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14247635, nssv14252465, nssv14248626, nssv14244466, nssv14243493, nssv14240825, nssv14246902, nssv14243553, nssv14243498, nssv14242204, nssv14241918, nssv14249826, nssv14244118, nssv14248757, nssv14242157, nssv14251603, nssv14245727, nssv14246995, nssv14247709, nssv14247188, nssv14248805, nssv14241107, nssv14249168, nssv14249201, nssv14248221, nssv14243367, nssv14243849, nssv14249793, nssv14250173, nssv14243887, nssv14251815

Samples

NGO_13, SNI_17, NGO_27, NGO_18, NGO_12, NGO_28, NGO_53, NGO_17, SNI_9, NGO_31, NGO_50, NGO_35, NGO_30, NGO_20, MLY_2, PML_2, SNI_16, NGO_6, NGO_5, NGO_48, MLY_4, SNI_14, NGO_11, NGO_7, NGO_38

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169804

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	25
Observed Complex	0
Frequency	n/a