Variant Details

Variant: nsv3169781

Internal ID

21313592

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:143538619..143942271	hg38	UCSC Ensembl
Outer	chr1:143538619..144572337	hg38	UCSC Ensembl
Inner	chr1:149024802..149436842	hg19	UCSC Ensembl
Outer	chr1:148953996..149521840	hg19	UCSC Ensembl
Inner	chr1:147291426..147703466	hg18	UCSC Ensembl
Outer	chr1:147220620..147788464	hg18	UCSC Ensembl

Cytoband

1q21.1

Allele length

Assembly	Allele length
hg38	1033719
hg19	567845
hg18	567845

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14244280, nssv14244571, nssv14245407, nssv14248334, nssv14242476, nssv14243603, nssv14252461, nssv14251336, nssv14243142, nssv14244826, nssv14247514, nssv14242776, nssv14251969, nssv14243825, nssv14241191, nssv14240919, nssv14249111, nssv14250309, nssv14244057, nssv14243909, nssv14245184, nssv14242957, nssv14245539, nssv14241431, nssv14241937, nssv14247380, nssv14250122, nssv14243441, nssv14252455, nssv14252277, nssv14246256, nssv14251198, nssv14245324, nssv14245387, nssv14248017, nssv14247291, nssv14248934

Samples

NGO_3, NGO_22, SNI_13, SNI_8, MLY_1, SNI_11, NGO_12, MLY_12, NGO_53, SNI_10, NGO_29, NGO_32, NGO_10, NGO_45, NGO_17, MLY_13, SNI_9, NGO_24, NGO_31, PML_3, NGO_50, NGO_39, NGO_14, NGO_33, MLY_8, PML_4, SNI_12, NGO_52, NGO_55, NGO_36, NGO_34, NGO_38, SNI_4

Known Genes

FCGR1C, LOC101929780, LOC388692, NBPF23

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169781

Frequency

Sample Size	93
Observed Gain	2
Observed Loss	31
Observed Complex	0
Frequency	n/a