Variant Details

Variant: nsv3169742

Internal ID

21313553

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr3:132273929..132276840	hg38	UCSC Ensembl
Outer	chr3:132273893..132281633	hg38	UCSC Ensembl
Inner	chr3:131992773..131995684	hg19	UCSC Ensembl
Outer	chr3:131992737..132000477	hg19	UCSC Ensembl
Inner	chr3:133475463..133478374	hg18	UCSC Ensembl
Outer	chr3:133475427..133483167	hg18	UCSC Ensembl

Cytoband

3q22.1

Allele length

Assembly	Allele length
hg38	7741
hg19	7741
hg18	7741

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14247082, nssv14246803, nssv14243211, nssv14242024, nssv14247714, nssv14244327, nssv14244535, nssv14244543, nssv14245313, nssv14246469, nssv14243925, nssv14247049, nssv14243730, nssv14246089, nssv14242991, nssv14241746, nssv14241331, nssv14251563, nssv14242684, nssv14241994, nssv14251517, nssv14243224, nssv14249980, nssv14247232, nssv14245953, nssv14244245, nssv14242592, nssv14250437, nssv14249417, nssv14243694, nssv14241690, nssv14245620, nssv14246517, nssv14248581, nssv14245079, nssv14248804, nssv14247043, nssv14250769, nssv14242556, nssv14248452, nssv14245929, nssv14245487, nssv14243568, nssv14249835

Samples

NGO_13, NGO_21, SNI_17, NGO_22, MLY_6, MLY_5, NGO_27, SNI_11, NGO_18, NGO_12, NGO_41, NGO_28, MLY_12, NGO_53, NGO_32, NGO_10, NGO_17, MLY_13, NGO_54, NGO_24, NGO_50, NGO_35, NGO_30, MLY_9, NGO_20, NGO_26, NGO_47, NGO_2, SNI_16, NGO_33, MLY_3, MLY_8, SNI_12, NGO_55, NGO_36, NGO_23, NGO_49, SNI_15, NGO_42, NGO_34, NGO_5, NGO_48, SNI_14, NGO_15

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169742

Frequency

Sample Size	93
Observed Gain	1
Observed Loss	43
Observed Complex	0
Frequency	n/a