Variant Details

Variant: nsv3169646

Internal ID

21313457

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr17:18452078..18606845	hg38	UCSC Ensembl
Outer	chr17:18416548..18626375	hg38	UCSC Ensembl
Inner	chr17:18355392..18510158	hg19	UCSC Ensembl
Outer	chr17:18319862..18529688	hg19	UCSC Ensembl
Inner	chr17:18296117..18450883	hg18	UCSC Ensembl
Outer	chr17:18260587..18470413	hg18	UCSC Ensembl

Cytoband

17p11.2

Allele length

Assembly	Allele length
hg38	209828
hg19	209827
hg18	209827

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14249877, nssv14250633, nssv14252001, nssv14246593, nssv14244648, nssv14250934, nssv14251567, nssv14243865, nssv14249394, nssv14242984, nssv14244486, nssv14241024, nssv14241658, nssv14246960, nssv14251071, nssv14252113, nssv14244991, nssv14250078, nssv14249728, nssv14242056, nssv14243333, nssv14250833, nssv14240766, nssv14244795, nssv14247168, nssv14243894, nssv14251344, nssv14250227, nssv14250983, nssv14249320, nssv14244863, nssv14244332, nssv14250072, nssv14246385, nssv14243444, nssv14247797, nssv14247900, nssv14241219, nssv14245789, nssv14244552, nssv14250754, nssv14244008

Samples

NGO_21, MLY_15, SNI_2, MLY_6, MLY_5, NGO_27, SNI_13, SNI_8, MLY_11, MLY_17, NGO_28, MLY_12, SNI_10, NGO_10, NGO_46, NGO_4, MLY_13, NGO_43, MLY_16, PML_3, NGO_50, NGO_30, MLY_9, NGO_20, NGO_47, PML_4, NGO_16, NGO_1, NGO_52, NGO_55, NGO_23, SNI_5, SNI_6, NGO_42, NGO_5, NGO_8, NGO_44, MLY_4, NGO_11, NGO_51, SNI_4

Known Genes

CCDC144B, FAM106A, KRT16P1, LGALS9C, LOC339240, USP32P2

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169646

Frequency

Sample Size	93
Observed Gain	17
Observed Loss	24
Observed Complex	0
Frequency	n/a