Variant Details

Variant: nsv3169625

Internal ID

21313436

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr8:12791219..12795017	hg38	UCSC Ensembl
Outer	chr8:12788880..12796024	hg38	UCSC Ensembl
Inner	chr8:12648728..12652526	hg19	UCSC Ensembl
Outer	chr8:12646389..12653533	hg19	UCSC Ensembl
Inner	chr8:12693099..12696897	hg18	UCSC Ensembl
Outer	chr8:12690760..12697904	hg18	UCSC Ensembl

Cytoband

8p23.1

Allele length

Assembly	Allele length
hg38	7145
hg19	7145
hg18	7145

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14245809, nssv14244601, nssv14245832, nssv14243920, nssv14250386, nssv14245489, nssv14241042, nssv14244417, nssv14248340, nssv14249692, nssv14243664, nssv14245004, nssv14242031, nssv14242672, nssv14245253, nssv14242653, nssv14243615, nssv14250151, nssv14247186, nssv14247525, nssv14251015, nssv14243990, nssv14249511, nssv14252101, nssv14252136, nssv14245773, nssv14249431, nssv14246481, nssv14243653, nssv14243293, nssv14243288, nssv14251125, nssv14244197, nssv14243936, nssv14246808, nssv14243319, nssv14249717, nssv14246410, nssv14251474, nssv14248305, nssv14251018, nssv14251369, nssv14252397, nssv14249586, nssv14250036, nssv14240788, nssv14247177, nssv14252354, nssv14244364, nssv14242722, nssv14244711, nssv14243988

Samples

NGO_21, NGO_3, SNI_2, MLY_6, NGO_27, SNI_11, NGO_37, NGO_18, NGO_12, NGO_41, NGO_28, NGO_53, SNI_7, NGO_29, NGO_32, NGO_46, NGO_9, NGO_45, PML_1, NGO_4, NGO_17, NGO_43, SNI_9, NGO_54, NGO_31, PML_3, NGO_50, NGO_35, NGO_14, NGO_30, NGO_47, NGO_40, NGO_6, MLY_3, NGO_16, SNI_3, NGO_1, NGO_52, NGO_55, NGO_23, NGO_49, SNI_6, SNI_15, NGO_42, NGO_5, NGO_48, MLY_10, NGO_44, NGO_11, NGO_51, NGO_38, SNI_4

Known Genes

LINC00681, LOC340357

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169625

Frequency

Sample Size	93
Observed Gain	1
Observed Loss	51
Observed Complex	0
Frequency	n/a