Variant Details

Variant: nsv3169591

Internal ID

21313824

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr15:39296025..39299987	hg38	UCSC Ensembl
Outer	chr15:39295103..39305425	hg38	UCSC Ensembl
Inner	chr15:39588226..39592188	hg19	UCSC Ensembl
Outer	chr15:39587304..39597626	hg19	UCSC Ensembl
Inner	chr15:37375518..37379480	hg18	UCSC Ensembl
Outer	chr15:37374596..37384918	hg18	UCSC Ensembl

Cytoband

15q14

Allele length

Assembly	Allele length
hg38	10323
hg19	10323
hg18	10323

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14246787, nssv14244388, nssv14250333, nssv14249912, nssv14243399, nssv14245349, nssv14240789, nssv14246265, nssv14248404, nssv14249887, nssv14248964, nssv14245279, nssv14246679, nssv14245033, nssv14248957, nssv14245293, nssv14245815, nssv14248565, nssv14241286, nssv14244256, nssv14246542, nssv14250413, nssv14252305, nssv14250210, nssv14244145, nssv14248149, nssv14245718, nssv14247653, nssv14251342, nssv14252294

Samples

NGO_13, NGO_21, NGO_3, SNI_13, SNI_8, NGO_37, MLY_11, NGO_41, MLY_12, NGO_29, PML_1, MLY_13, MLY_16, NGO_31, PML_3, NGO_39, NGO_14, NGO_26, MLY_7, NGO_47, NGO_2, PML_4, NGO_1, SNI_6, NGO_42, MLY_4, MLY_14, NGO_51, NGO_15, SNI_4

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169591

Frequency

Sample Size	93
Observed Gain	1
Observed Loss	29
Observed Complex	0
Frequency	n/a