Variant Details

Variant: nsv3169589

Internal ID

21313822

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr5:86819561..86823329	hg38	UCSC Ensembl
Outer	chr5:86815939..86825812	hg38	UCSC Ensembl
Inner	chr5:86115378..86119146	hg19	UCSC Ensembl
Outer	chr5:86111756..86121629	hg19	UCSC Ensembl
Inner	chr5:86151134..86154902	hg18	UCSC Ensembl
Outer	chr5:86147512..86157385	hg18	UCSC Ensembl

Cytoband

5q14.3

Allele length

Assembly	Allele length
hg38	9874
hg19	9874
hg18	9874

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14247031, nssv14241034, nssv14245045, nssv14243789, nssv14244273, nssv14243014, nssv14243696, nssv14242405, nssv14248973, nssv14243946, nssv14252209, nssv14243206, nssv14250486, nssv14246756, nssv14249426, nssv14244744, nssv14242012, nssv14251157, nssv14249572, nssv14243136, nssv14252279, nssv14251328, nssv14241845, nssv14241153, nssv14245828, nssv14248811, nssv14250351, nssv14247774, nssv14242043, nssv14245030, nssv14247483, nssv14251381

Samples

MLY_15, SNI_17, NGO_3, MLY_5, SNI_13, SNI_8, SNI_11, NGO_12, SNI_10, SNI_7, NGO_10, NGO_9, NGO_4, MLY_13, SNI_9, MLY_9, SNI_1, MLY_7, MLY_2, SNI_16, NGO_6, MLY_3, SNI_12, SNI_3, NGO_1, SNI_5, NGO_8, MLY_4, MLY_14, SNI_14, NGO_7, SNI_4

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169589

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	32
Observed Complex	0
Frequency	n/a