Variant Details

Variant: nsv3169580

Internal ID

21313813

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr12:11328332..11390452	hg38	UCSC Ensembl
Outer	chr12:11325747..11390472	hg38	UCSC Ensembl
Inner	chr12:11481266..11543386	hg19	UCSC Ensembl
Outer	chr12:11478681..11543406	hg19	UCSC Ensembl
Inner	chr12:11372533..11434653	hg18	UCSC Ensembl
Outer	chr12:11369948..11434673	hg18	UCSC Ensembl

Cytoband

12p13.2

Allele length

Assembly	Allele length
hg38	64726
hg19	64726
hg18	64726

Variant Type

OTHER complex

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14246597, nssv14242117, nssv14245726, nssv14241323, nssv14250016, nssv14252422, nssv14244103, nssv14247565, nssv14247209, nssv14243496, nssv14249179, nssv14251764, nssv14241515, nssv14250366, nssv14247489, nssv14245682, nssv14252198, nssv14242867, nssv14244927, nssv14245834, nssv14243442, nssv14249084, nssv14242281, nssv14251502, nssv14248397, nssv14243907, nssv14249414, nssv14251039, nssv14242411, nssv14244166, nssv14243913, nssv14248272, nssv14248042, nssv14248829, nssv14246213, nssv14252445, nssv14242602, nssv14251493, nssv14245760, nssv14250931, nssv14248458, nssv14249536, nssv14251985, nssv14249639

Samples

NGO_13, NGO_21, MLY_15, NGO_22, MLY_6, NGO_27, NGO_37, NGO_18, NGO_12, MLY_11, MLY_17, NGO_53, NGO_32, PML_1, NGO_17, NGO_43, NGO_31, NGO_14, NGO_19, NGO_30, NGO_20, SNI_1, NGO_40, NGO_25, NGO_6, NGO_33, MLY_8, PML_4, NGO_55, NGO_36, NGO_23, SNI_5, NGO_42, NGO_34, NGO_48, MLY_10, NGO_44, NGO_7, NGO_51, NGO_38

Known Genes

PRB1

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169580

Frequency

Sample Size	93
Observed Gain	18
Observed Loss	22
Observed Complex	0
Frequency	n/a