Variant Details

Variant: nsv3169548

Internal ID

21313781

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr1:161543969..161668740	hg38	UCSC Ensembl
Outer	chr1:161539085..161678447	hg38	UCSC Ensembl
Inner	chr1:161513759..161638530	hg19	UCSC Ensembl
Outer	chr1:161508875..161648237	hg19	UCSC Ensembl
Inner	chr1:159780383..159905154	hg18	UCSC Ensembl
Outer	chr1:159775499..159914861	hg18	UCSC Ensembl

Cytoband

1q23.3

Allele length

Assembly	Allele length
hg38	139363
hg19	139363
hg18	139363

Variant Type

CNV duplication

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14251062, nssv14243519, nssv14243673, nssv14252051, nssv14245588, nssv14241595, nssv14250543, nssv14251751, nssv14248884, nssv14240944, nssv14246534, nssv14252190, nssv14247853, nssv14244891, nssv14251991, nssv14240910, nssv14242041, nssv14247597, nssv14242689, nssv14244566, nssv14247847, nssv14241905, nssv14249636, nssv14241460, nssv14246333, nssv14243971, nssv14252416, nssv14243860, nssv14249183, nssv14241178, nssv14246107, nssv14249823, nssv14247030, nssv14246176, nssv14251804, nssv14251676, nssv14247463, nssv14242947, nssv14247993, nssv14246028, nssv14240801, nssv14251741, nssv14252154, nssv14250816, nssv14241859, nssv14243692, nssv14240984, nssv14251743, nssv14251052, nssv14243963, nssv14251700, nssv14242073, nssv14243412, nssv14247503, nssv14245434, nssv14245226, nssv14250605, nssv14249223, nssv14247997, nssv14252276, nssv14245420, nssv14243720, nssv14250080, nssv14247452, nssv14246354, nssv14242468, nssv14246366, nssv14246846, nssv14252370, nssv14248241, nssv14244324, nssv14249451, nssv14247960, nssv14243315, nssv14244633, nssv14251333, nssv14251617, nssv14251019, nssv14250370, nssv14245299, nssv14245878, nssv14251793, nssv14241809, nssv14248285

Samples

NGO_13, NGO_21, MLY_15, NGO_3, NGO_22, SNI_2, MLY_6, MLY_5, NGO_27, SNI_13, SNI_8, MLY_1, SNI_11, NGO_37, NGO_18, NGO_12, MLY_11, NGO_41, NGO_28, MLY_12, NGO_53, SNI_10, SNI_7, NGO_29, NGO_10, NGO_46, NGO_9, NGO_45, PML_1, NGO_4, NGO_17, NGO_43, MLY_16, NGO_54, NGO_24, NGO_31, NGO_50, NGO_35, NGO_39, NGO_14, NGO_19, NGO_30, MLY_9, NGO_20, NGO_26, SNI_1, MLY_7, NGO_40, MLY_2, NGO_2, SNI_16, NGO_25, NGO_6, NGO_33, MLY_3, MLY_8, PML_4, NGO_16, SNI_3, NGO_1, NGO_52, NGO_55, NGO_36, NGO_23, SNI_5, NGO_49, SNI_6, SNI_15, NGO_42, NGO_34, NGO_5, NGO_48, MLY_10, NGO_8, NGO_44, MLY_4, MLY_14, SNI_14, NGO_11, NGO_7, NGO_51, NGO_15, NGO_38, SNI_4

Known Genes

FCGR2B, FCGR2C, FCGR3A, FCGR3B, HSPA7

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169548

Frequency

Sample Size	93
Observed Gain	84
Observed Loss	0
Observed Complex	0
Frequency	n/a