Variant Details

Variant: nsv3169534

Internal ID

21313767

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr13:31957787..31964286	hg38	UCSC Ensembl
Outer	chr13:31957487..31965910	hg38	UCSC Ensembl
Inner	chr13:32531924..32538423	hg19	UCSC Ensembl
Outer	chr13:32531624..32540047	hg19	UCSC Ensembl
Inner	chr13:31429924..31436423	hg18	UCSC Ensembl
Outer	chr13:31429624..31438047	hg18	UCSC Ensembl

Cytoband

13q13.1

Allele length

Assembly	Allele length
hg38	8424
hg19	8424
hg18	8424

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14242738, nssv14244634, nssv14244095, nssv14252087, nssv14246800, nssv14245884, nssv14242379, nssv14252377, nssv14244675, nssv14251122, nssv14242391, nssv14245335, nssv14248069, nssv14243512, nssv14246475, nssv14250137, nssv14248211, nssv14245863, nssv14241776, nssv14241374, nssv14243202, nssv14244975, nssv14252544, nssv14241600, nssv14249027, nssv14251724, nssv14250479, nssv14250592, nssv14245870

Samples

NGO_3, NGO_22, MLY_6, MLY_5, NGO_27, SNI_11, MLY_17, NGO_28, NGO_53, NGO_32, NGO_9, PML_1, SNI_9, PML_3, NGO_14, NGO_30, NGO_26, SNI_1, NGO_2, NGO_25, MLY_8, PML_4, NGO_55, NGO_23, SNI_5, MLY_14, NGO_11, NGO_38, SNI_4

Known Genes

EEF1DP3

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169534

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	29
Observed Complex	0
Frequency	n/a