Variant Details

Variant: nsv3169477

Internal ID

21313960

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr4:68416487..68478894	hg38	UCSC Ensembl
Outer	chr4:68395346..68494770	hg38	UCSC Ensembl
Inner	chr4:69282205..69344612	hg19	UCSC Ensembl
Outer	chr4:69261064..69360488	hg19	UCSC Ensembl
Inner	chr4:68964800..69027207	hg18	UCSC Ensembl
Outer	chr4:68943659..69043083	hg18	UCSC Ensembl

Cytoband

4q13.2

Allele length

Assembly	Allele length
hg38	99425
hg19	99425
hg18	99425

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14249247, nssv14246509, nssv14248906, nssv14249689, nssv14251545, nssv14245456, nssv14244209, nssv14241189, nssv14246944, nssv14245170, nssv14244107, nssv14249554, nssv14250261, nssv14244060, nssv14241723, nssv14242956, nssv14244699, nssv14241341, nssv14244559, nssv14251354, nssv14246090, nssv14251473, nssv14245273, nssv14244378, nssv14245806, nssv14244313, nssv14242698, nssv14246455, nssv14252288, nssv14250042, nssv14244843, nssv14249938, nssv14248478, nssv14243134, nssv14249846, nssv14251734, nssv14247129, nssv14248723, nssv14246085, nssv14246628, nssv14241778, nssv14249197, nssv14248276, nssv14248579, nssv14249833, nssv14245702, nssv14251008, nssv14244653, nssv14244499, nssv14252421, nssv14243205

Samples

NGO_21, MLY_15, SNI_17, MLY_6, MLY_5, NGO_27, SNI_13, MLY_1, SNI_11, NGO_37, MLY_11, MLY_12, NGO_29, NGO_32, NGO_10, NGO_45, PML_1, NGO_17, MLY_13, NGO_43, MLY_16, SNI_9, PML_3, NGO_50, MLY_9, NGO_20, SNI_1, MLY_7, MLY_2, PML_2, SNI_16, NGO_6, NGO_33, MLY_3, MLY_8, PML_4, NGO_1, NGO_52, NGO_55, NGO_23, SNI_5, NGO_49, NGO_48, MLY_10, NGO_8, NGO_44, MLY_4, MLY_14, NGO_11, NGO_7, NGO_38

Known Genes

TMPRSS11E

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169477

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	51
Observed Complex	0
Frequency	n/a