Variant Details

Variant: nsv3169376

Internal ID

21313859

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr12:27942560..27944711	hg38	UCSC Ensembl
Outer	chr12:27941988..27950527	hg38	UCSC Ensembl
Inner	chr12:28095493..28097644	hg19	UCSC Ensembl
Outer	chr12:28094921..28103460	hg19	UCSC Ensembl
Inner	chr12:27986760..27988911	hg18	UCSC Ensembl
Outer	chr12:27986188..27994727	hg18	UCSC Ensembl

Cytoband

12p11.22

Allele length

Assembly	Allele length
hg38	8540
hg19	8540
hg18	8540

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14242660, nssv14241397, nssv14247944, nssv14248210, nssv14242791, nssv14248147, nssv14245552, nssv14244153, nssv14241599, nssv14240922, nssv14251375, nssv14245776, nssv14247273, nssv14245904, nssv14242319, nssv14247787, nssv14246192, nssv14248662, nssv14250785, nssv14245244, nssv14242137, nssv14250780, nssv14251925, nssv14247647, nssv14242790, nssv14250405, nssv14244523

Samples

NGO_21, NGO_3, MLY_5, NGO_27, SNI_13, NGO_37, MLY_17, NGO_28, MLY_12, SNI_7, NGO_29, NGO_32, NGO_10, NGO_50, NGO_14, NGO_20, MLY_2, NGO_2, SNI_16, MLY_3, MLY_8, NGO_55, NGO_8, MLY_14, SNI_14, NGO_11, NGO_7

Known Genes

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169376

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	27
Observed Complex	0
Frequency	n/a