Variant Details

Variant: nsv3169361

Internal ID

21313844

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr19:8285313..8300183	hg38	UCSC Ensembl
Outer	chr19:8270055..8313986	hg38	UCSC Ensembl
Inner	chr19:8350197..8365067	hg19	UCSC Ensembl
Outer	chr19:8334939..8378870	hg19	UCSC Ensembl
Inner	chr19:8256197..8271067	hg18	UCSC Ensembl
Outer	chr19:8240939..8284870	hg18	UCSC Ensembl

Cytoband

19p13.2

Allele length

Assembly	Allele length
hg38	43932
hg19	43932
hg18	43932

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv14249127, nssv14245231, nssv14243216, nssv14242677, nssv14241357, nssv14251859, nssv14240904, nssv14242451, nssv14241485, nssv14250864, nssv14246394, nssv14252249, nssv14244127, nssv14252008, nssv14248082, nssv14245376, nssv14243560, nssv14248204, nssv14246719, nssv14246317, nssv14240844, nssv14247471, nssv14244065, nssv14246706, nssv14248008, nssv14250028, nssv14241511, nssv14242878, nssv14241326, nssv14240961, nssv14248749, nssv14249315, nssv14250206, nssv14251650, nssv14240776, nssv14248847, nssv14245467, nssv14245788, nssv14243263, nssv14245589, nssv14243660, nssv14245038, nssv14243974, nssv14249641, nssv14245735, nssv14244844, nssv14244241, nssv14246577, nssv14243473, nssv14243004, nssv14248752, nssv14248031, nssv14243212, nssv14246083, nssv14244530, nssv14244825, nssv14244544, nssv14249845, nssv14244087, nssv14251086, nssv14242502, nssv14248129, nssv14242731, nssv14248548, nssv14248511, nssv14249907, nssv14241986, nssv14243197, nssv14242213, nssv14252400, nssv14251349, nssv14246690, nssv14249226, nssv14246968, nssv14244044, nssv14250758, nssv14242630, nssv14242629, nssv14240794, nssv14245637, nssv14245135, nssv14252122, nssv14246264, nssv14242462, nssv14243085, nssv14247583, nssv14242062, nssv14250203, nssv14242501

Samples

NGO_13, NGO_21, MLY_15, SNI_17, NGO_3, NGO_22, SNI_2, MLY_6, MLY_5, NGO_27, SNI_13, SNI_8, MLY_1, SNI_11, NGO_37, NGO_18, NGO_12, MLY_11, NGO_41, MLY_17, NGO_28, MLY_12, NGO_53, SNI_10, SNI_7, NGO_29, NGO_32, NGO_10, NGO_46, NGO_9, NGO_45, PML_1, NGO_4, NGO_17, MLY_13, NGO_43, MLY_16, SNI_9, NGO_54, NGO_24, NGO_31, PML_3, NGO_50, NGO_35, NGO_39, NGO_14, NGO_19, NGO_30, MLY_9, NGO_20, NGO_26, SNI_1, MLY_7, NGO_47, NGO_40, MLY_2, PML_2, NGO_2, SNI_16, NGO_25, NGO_6, NGO_33, MLY_3, PML_4, NGO_16, SNI_12, SNI_3, NGO_1, NGO_52, NGO_55, NGO_36, NGO_23, SNI_5, NGO_49, SNI_6, SNI_15, NGO_42, NGO_34, NGO_5, NGO_48, MLY_10, NGO_8, SNI_14, NGO_11, NGO_7, NGO_51, NGO_15, NGO_38, SNI_4

Known Genes

CD320, NDUFA7

Method

SNP array

Analysis

Platform

Affymetrix Genome-wide SNP array 6.0

Comments

Reference

Fu_et_al_2018

Pubmed ID

29476164

Accession Number(s)

nsv3169361

Frequency

Sample Size	93
Observed Gain	0
Observed Loss	89
Observed Complex	0
Frequency	n/a