A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161949



Internal ID18956638
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr10:46324326..46333401hg38UCSC Ensembl
Outerchr10:46324033..46368047hg38UCSC Ensembl
Innerchr10:47695562..47704637hg19UCSC Ensembl
Outerchr10:47695269..47739264hg19UCSC Ensembl
Cytoband10q11.22
Allele length
AssemblyAllele length
hg3844015
hg1943996
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4038157
Samples
Known GenesANTXRL
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161949
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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