A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161878



Internal ID19302709
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr9:78753820..78756851hg38UCSC Ensembl
Outerchr9:78750145..78757603hg38UCSC Ensembl
Innerchr9:81368736..81371767hg19UCSC Ensembl
Outerchr9:81365061..81372519hg19UCSC Ensembl
Cytoband9q21.31
Allele length
AssemblyAllele length
hg387459
hg197459
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4037820
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161878
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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