A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161758



Internal ID18956226
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:42673886..42730190hg38UCSC Ensembl
Outerchr8:42666258..42733252hg38UCSC Ensembl
Innerchr8:42529029..42585333hg19UCSC Ensembl
Outerchr8:42521401..42588395hg19UCSC Ensembl
Cytoband8p11.21
Allele length
AssemblyAllele length
hg3866995
hg1966995
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4036933
Samples
Known GenesCHRNB3
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161758
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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