A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161755



Internal ID19304452
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr8:39378084..39531605hg38UCSC Ensembl
Outerchr8:39373140..39537590hg38UCSC Ensembl
Innerchr8:39235603..39389124hg19UCSC Ensembl
Outerchr8:39230659..39395109hg19UCSC Ensembl
Cytoband8p11.22
Allele length
AssemblyAllele length
hg38164451
hg19164451
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv266n111
Supporting Variantsnssv4036929, nssv4036930, nssv4036928
Samples
Known GenesADAM3A, ADAM5
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161755
Frequency
Sample Size369
Observed Gain0
Observed Loss3
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer