A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161730



Internal ID19303619
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:161527110..161541619hg38UCSC Ensembl
Outerchr1:161509648..161543969hg38UCSC Ensembl
Innerchr1:161496900..161511409hg19UCSC Ensembl
Outerchr1:161479438..161513759hg19UCSC Ensembl
Cytoband1q23.3
Allele length
AssemblyAllele length
hg3834322
hg1934322
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4029939
Samples
Known GenesFCGR2A, FCGR3A, HSPA6
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161730
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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