A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161602



Internal ID18957488
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr7:115943399..115946380hg38UCSC Ensembl
Outerchr7:115942028..115947168hg38UCSC Ensembl
Innerchr7:115583453..115586434hg19UCSC Ensembl
Outerchr7:115582082..115587222hg19UCSC Ensembl
Cytoband7q31.2
Allele length
AssemblyAllele length
hg385141
hg195141
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4035699
Samples
Known GenesTFEC
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161602
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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