Variant DetailsVariant: nsv1161563Internal ID | 18956445 | Landmark | | Location Information | | Cytoband | 7q11.23 | Allele length | Assembly | Allele length | hg38 | 377093 | hg19 | 320550 |
| Variant Type | CNV deletion | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv4035581 | Samples | | Known Genes | GTF2IP1, LOC100093631, LOC100101148, LOC541473, NCF1B, NSUN5, NSUN5P2, PMS2L2, PMS2P5, POM121, SPDYE8P, STAG3L1, STAG3L3 | Method | SNP array | Analysis | 1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation. | Platform | Affymetrix SNP Array 6.0 | Comments | | Reference | Lou_et_al_2015 | Pubmed ID | 26073780 | Accession Number(s) | nsv1161563
| Frequency | Sample Size | 369 | Observed Gain | 0 | Observed Loss | 1 | Observed Complex | 0 | Frequency | n/a |
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