A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161548



Internal ID18957683
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:143541857..143878980hg38UCSC Ensembl
Outerchr1:143538619..143890323hg38UCSC Ensembl
Innerchr1:149036524..149373541hg19UCSC Ensembl
Outerchr1:149024808..149384897hg19UCSC Ensembl
Cytoband1q21.2
Allele length
AssemblyAllele length
hg38351705
hg19360090
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv22n111
Supporting Variantsnssv4029807
Samples
Known GenesFCGR1C, LOC101929780, LOC388692, NBPF23
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161548
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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