Variant DetailsVariant: nsv1161354 Internal ID | 18956947 | Landmark | | Location Information | | Cytoband | 6p22.1 | Allele length | Assembly | Allele length | hg38 | 89390 | hg19 | 89390 |
| Variant Type | CNV deletion | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv4034308, nssv4034333, nssv4034286, nssv4034372, nssv4034293, nssv4034315, nssv4034330, nssv4034356, nssv4034360, nssv4034319, nssv4034339, nssv4034353, nssv4034371, nssv4034348, nssv4034358, nssv4034338, nssv4034318, nssv4034331, nssv4034300, nssv4034328, nssv4034363, nssv4034336, nssv4034361, nssv4034341, nssv4034350, nssv4034342, nssv4034290, nssv4034297, nssv4034301, nssv4034317, nssv4034343, nssv4034291, nssv4034302, nssv4034320, nssv4034288, nssv4034349, nssv4034295, nssv4034351, nssv4034332, nssv4034322, nssv4034366, nssv4034335, nssv4034367, nssv4034323, nssv4034325, nssv4034369, nssv4034303, nssv4034279, nssv4034314, nssv4034312, nssv4034274, nssv4034347, nssv4034365, nssv4034370, nssv4034337, nssv4034324, nssv4034352, nssv4034277, nssv4034310, nssv4034321, nssv4034373, nssv4034327, nssv4034289, nssv4034285, nssv4034313, nssv4034326, nssv4034306, nssv4034275, nssv4034305, nssv4034311, nssv4034294, nssv4034362, nssv4034374, nssv4034284, nssv4034359, nssv4034281, nssv4034307, nssv4034329, nssv4034364, nssv4034292, nssv4034309, nssv4034368, nssv4034276, nssv4034299, nssv4034316, nssv4034345, nssv4034296, nssv4034298, nssv4034344, nssv4034357, nssv4034354, nssv4034278, nssv4034346, nssv4034283, nssv4034355, nssv4034340, nssv4034280, nssv4034287, nssv4034282, nssv4034334, nssv4034304 | Samples | | Known Genes | HCG4B, HLA-A, HLA-H | Method | SNP array | Analysis | 1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation. | Platform | Affymetrix SNP Array 6.0 | Comments | | Reference | Lou_et_al_2015 | Pubmed ID | 26073780 | Accession Number(s) | nsv1161354
| Frequency | Sample Size | 369 | Observed Gain | 0 | Observed Loss | 101 | Observed Complex | 0 | Frequency | n/a |
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