A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161144



Internal ID19302509
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:124592517..124635573hg38UCSC Ensembl
Outerchr4:124589960..124638125hg38UCSC Ensembl
Innerchr4:125513672..125556728hg19UCSC Ensembl
Outerchr4:125511115..125559280hg19UCSC Ensembl
Cytoband4q28.1
Allele length
AssemblyAllele length
hg3848166
hg1948166
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4029327
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161144
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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