Variant DetailsVariant: nsv1161106![](http://dgv.tcag.ca/gb2/gbrowse_img/dgv2_hg38/?name=chr4:68478894..68623617;width=800;overview=1) Internal ID | 18955977 | Landmark | | Location Information | | Cytoband | 4q13.2 | Allele length | Assembly | Allele length | hg38 | 144724 | hg19 | 144724 |
| Variant Type | CNV deletion | Copy Number | | Allele State | | Allele Origin | | Probe Count | | Validation Flag | | Merged Status | M | Merged Variants | | Supporting Variants | nssv4029052, nssv4029100, nssv4029116, nssv4029033, nssv4029030, nssv4029081, nssv4029102, nssv4029021, nssv4029051, nssv4029060, nssv4029101, nssv4029012, nssv4029104, nssv4029026, nssv4029023, nssv4029118, nssv4029092, nssv4029047, nssv4029041, nssv4029058, nssv4029006, nssv4029079, nssv4029094, nssv4029080, nssv4032812, nssv4029022, nssv4029018, nssv4032813, nssv4029062, nssv4029049, nssv4029070, nssv4029001, nssv4029055, nssv4029110, nssv4029059, nssv4029016, nssv4029114, nssv4029002, nssv4029083, nssv4029088, nssv4032814, nssv4029085, nssv4029061, nssv4029108, nssv4029013, nssv4029005, nssv4029117, nssv4029007, nssv4029015, nssv4029089, nssv4029056, nssv4029107, nssv4029106, nssv4029112, nssv4029086, nssv4029014, nssv4029043, nssv4029099, nssv4029017, nssv4029004, nssv4029096, nssv4029019, nssv4029000, nssv4029054, nssv4029103, nssv4029111, nssv4029050, nssv4029069, nssv4029003, nssv4029072, nssv4029038, nssv4029063, nssv4029011, nssv4029075, nssv4032811, nssv4029074, nssv4029010, nssv4029068, nssv4029036, nssv4029037, nssv4029008, nssv4029082, nssv4029105, nssv4029048, nssv4029113, nssv4029039, nssv4029091, nssv4029057, nssv4032816, nssv4029095, nssv4029115, nssv4029029, nssv4032815, nssv4029025, nssv4029090, nssv4029040, nssv4029027, nssv4029078, nssv4029073, nssv4029046, nssv4029066, nssv4029034, nssv4029084, nssv4029093, nssv4029044, nssv4029028, nssv4029077, nssv4029032, nssv4029071, nssv4029097, nssv4029035, nssv4029045, nssv4029067, nssv4029024 | Samples | | Known Genes | TMPRSS11E, UGT2B17 | Method | SNP array | Analysis | 1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation. | Platform | Affymetrix SNP Array 6.0 | Comments | | Reference | Lou_et_al_2015 | Pubmed ID | 26073780 | Accession Number(s) | nsv1161106
| Frequency | Sample Size | 369 | Observed Gain | 0 | Observed Loss | 114 | Observed Complex | 0 | Frequency | n/a |
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