A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1161027



Internal ID18956341
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr4:1704736..1737005hg38UCSC Ensembl
Outerchr4:1699833..1750693hg38UCSC Ensembl
Innerchr4:1706463..1738732hg19UCSC Ensembl
Outerchr4:1701560..1752420hg19UCSC Ensembl
Cytoband4p16.3
Allele length
AssemblyAllele length
hg3850861
hg1950861
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4028514
Samples
Known GenesSLBP, TACC3, TMEM129
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1161027
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer