A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160926



Internal ID18955765
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:1777584..1898088hg38UCSC Ensembl
Outerchr1:1772699..1905488hg38UCSC Ensembl
Innerchr1:1709023..1829527hg19UCSC Ensembl
Outerchr1:1704138..1836927hg19UCSC Ensembl
Cytoband1p36.33
Allele length
AssemblyAllele length
hg38132790
hg19132790
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4027656
Samples
Known GenesGNB1, NADK
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160926
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


Hosted by The Centre for Applied Genomics
Grant support for DGV
Please read the usage disclaimer