A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160886



Internal ID19303516
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr2:173728219..173732840hg38UCSC Ensembl
Outerchr2:173725212..173732928hg38UCSC Ensembl
Innerchr2:174592947..174597568hg19UCSC Ensembl
Outerchr2:174589940..174597656hg19UCSC Ensembl
Cytoband2q31.1
Allele length
AssemblyAllele length
hg387717
hg197717
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4027497
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160886
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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