A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160682



Internal ID18957425
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr20:50512480..50529762hg38UCSC Ensembl
Outerchr20:50509110..50530318hg38UCSC Ensembl
Innerchr20:49129017..49146299hg19UCSC Ensembl
Outerchr20:49125647..49146855hg19UCSC Ensembl
Cytoband20q13.13
Allele length
AssemblyAllele length
hg3821209
hg1921209
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv163n111
Supporting Variantsnssv4040298
Samples
Known GenesPTPN1
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160682
Frequency
Sample Size369
Observed Gain1
Observed Loss0
Observed Complex0
Frequencyn/a


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