A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160643



Internal ID19303613
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:874394..901705hg38UCSC Ensembl
Outerchr1:869076..914637hg38UCSC Ensembl
Innerchr1:809774..837085hg19UCSC Ensembl
Outerchr1:804456..850017hg19UCSC Ensembl
Cytoband1p36.33
Allele length
AssemblyAllele length
hg3845562
hg1945562
Variant TypeCNV duplication
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv4n111
Supporting Variantsnssv4026212, nssv4026323
Samples
Known GenesFAM41C
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160643
Frequency
Sample Size369
Observed Gain2
Observed Loss0
Observed Complex0
Frequencyn/a


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