Variant Details

Variant: nsv1160572

Internal ID

19303543

Landmark

Location Information

Type	Coordinates	Assembly	Other Links
Inner	chr19:5510228..5513051	hg38	UCSC Ensembl
Outer	chr19:5506648..5515782	hg38	UCSC Ensembl
Inner	chr19:5510239..5513062	hg19	UCSC Ensembl
Outer	chr19:5506659..5515793	hg19	UCSC Ensembl

Cytoband

19p13.3

Allele length

Assembly	Allele length
hg38	9135
hg19	9135

Variant Type

CNV deletion

Copy Number

Allele State

Allele Origin

Probe Count

Validation Flag

Merged Status

Merged Variants

Supporting Variants

nssv4032664, nssv4039580, nssv4039523, nssv4039579, nssv4039515, nssv4039534, nssv4039536, nssv4032656, nssv4039567, nssv4039549, nssv4039530, nssv4039568, nssv4039558, nssv4039570, nssv4039569, nssv4032663, nssv4039566, nssv4032660, nssv4039514, nssv4039561, nssv4039541, nssv4039584, nssv4039571, nssv4039551, nssv4039513, nssv4039560, nssv4032669, nssv4039575, nssv4039517, nssv4039525, nssv4039552, nssv4032667, nssv4039554, nssv4039581, nssv4032655, nssv4039545, nssv4039547, nssv4039522, nssv4039585, nssv4039533, nssv4039556, nssv4039516, nssv4039524, nssv4039518, nssv4039537, nssv4039529, nssv4039531, nssv4039511, nssv4032658, nssv4039572, nssv4039553, nssv4039535, nssv4039510, nssv4032662, nssv4039562, nssv4039544, nssv4039532, nssv4032665, nssv4039528, nssv4039512, nssv4039559, nssv4039557, nssv4039582, nssv4039564, nssv4032659, nssv4039543, nssv4032661, nssv4032657, nssv4039563, nssv4039565, nssv4039527, nssv4039540, nssv4039526, nssv4039539, nssv4039548, nssv4032666, nssv4039583, nssv4039550, nssv4039573, nssv4032668, nssv4039538, nssv4039521, nssv4039519, nssv4039577, nssv4039509, nssv4039574, nssv4039555, nssv4039576, nssv4039542, nssv4039578, nssv4039520, nssv4039546

Samples

Known Genes

Method

SNP array

Analysis

1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.

Platform

Affymetrix SNP Array 6.0

Comments

Reference

Lou_et_al_2015

Pubmed ID

26073780

Accession Number(s)

nsv1160572

Frequency

Sample Size	369
Observed Gain	0
Observed Loss	92
Observed Complex	0
Frequency	n/a