A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160557



Internal ID18955981
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr19:1054061..1310137hg38UCSC Ensembl
Outerchr19:1038223..1317804hg38UCSC Ensembl
Innerchr19:1054060..1310136hg19UCSC Ensembl
Outerchr19:1038222..1317803hg19UCSC Ensembl
Cytoband19p13.3
Allele length
AssemblyAllele length
hg38279582
hg19279582
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv136n111
Supporting Variantsnssv4032648
Samples
Known GenesABCA7, ATP5D, C19orf24, C19orf26, CIRBP, CIRBP-AS1, CNN2, EFNA2, GPX4, HMHA1, MIDN, POLR2E, SBNO2, STK11
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160557
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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