A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160538



Internal ID18956953
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr1:248585893..248633912hg38UCSC Ensembl
Outerchr1:248574146..248645256hg38UCSC Ensembl
Innerchr1:248749194..248797213hg19UCSC Ensembl
Outerchr1:248737447..248808557hg19UCSC Ensembl
Cytoband1q44
Allele length
AssemblyAllele length
hg3871111
hg1971111
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variantsdgv29n111
Supporting Variantsnssv4026362, nssv4026361, nssv4026364, nssv4026370, nssv4026372, nssv4026375, nssv4026366, nssv4026373, nssv4026374, nssv4026378, nssv4026358, nssv4026376, nssv4026365, nssv4026354, nssv4026381, nssv4026355, nssv4026371, nssv4026382, nssv4026367, nssv4026356, nssv4026360, nssv4026363, nssv4026359, nssv4026377, nssv4026369, nssv4026353, nssv4026380
Samples
Known GenesOR2T10, OR2T11, OR2T34, OR2T35
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160538
Frequency
Sample Size369
Observed Gain0
Observed Loss27
Observed Complex0
Frequencyn/a


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