A curated catalogue of human genomic structural variation




Variant Details

Variant: nsv1160527



Internal ID19304611
Landmark
Location Information
TypeCoordinatesAssemblyOther Links
Innerchr18:60310508..60356570hg38UCSC Ensembl
Outerchr18:60310144..60358705hg38UCSC Ensembl
Innerchr18:57977741..58023803hg19UCSC Ensembl
Outerchr18:57977377..58025938hg19UCSC Ensembl
Cytoband18q21.32
Allele length
AssemblyAllele length
hg3848562
hg1948562
Variant TypeCNV deletion
Copy Number
Allele State
Allele Origin
Probe Count
Validation Flag
Merged StatusM
Merged Variants
Supporting Variantsnssv4032526
Samples
Known Genes
MethodSNP array
Analysis1) We applied common software Birdsuite to detect genome-wide CNVs; 2) we used our algorithm WinXPCNVer which is based on probe intensity to identify Tibetan specific CNV; 3) we further genotyped the discovered Tibetan specific CNV by K-means and manual observation.
PlatformAffymetrix SNP Array 6.0
Comments
ReferenceLou_et_al_2015
Pubmed ID26073780
Accession Number(s)nsv1160527
Frequency
Sample Size369
Observed Gain0
Observed Loss1
Observed Complex0
Frequencyn/a


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